Stack trace below. To repro, run command below, wait for page to render, then try scrolling. Seems 100% reproducible.

wkorman@lemur:~/chrome$ ./out/Debug/content_shell --enable-slimming-paint-v2 --enable-threaded-compositing --disable-composited-antialiasing ./third_party/WebKit/LayoutTests/animations/interpolation/filter-interpolation.html
[1:1:0525/165903.386688:1488658275958:FATAL:layer.cc(795)] Check failed: scrollable(). 
#0 0x7fe8536fe80b base::debug::StackTrace::StackTrace()
#1 0x7fe8536fd50c base::debug::StackTrace::StackTrace()
#2 0x7fe8537710d3 logging::LogMessage::~LogMessage()
#3 0x7fe84ee76dcd cc::Layer::UpdateScrollOffset()
#4 0x7fe84ee772c8 cc::Layer::SetScrollOffsetFromImplSide()
#5 0x7fe84f0f177b cc::LayerTreeHost::ApplyScrollAndScale()
#6 0x7fe84f1d2693 cc::ProxyMain::BeginMainFrame()
#7 0x7fe84f1cf72c _ZN4base8internal13FunctorTraitsIMN2cc9ProxyMainEFvSt10unique_ptrINS2_28BeginMainFrameAndCommitStateESt14default_deleteIS5_EEEvE6InvokeINS_7WeakPtrIS3_EEJS8_EEEvSA_OT_DpOT0_
#8 0x7fe84f1cf5cf _ZN4base8internal12InvokeHelperILb1EvE8MakeItSoIMN2cc9ProxyMainEFvSt10unique_ptrINS4_28BeginMainFrameAndCommitStateESt14default_deleteIS7_EEENS_7WeakPtrIS5_EEJSA_EEEvOT_OT0_DpOT1_
#9 0x7fe84f1cf538 _ZN4base8internal7InvokerINS0_9BindStateIMN2cc9ProxyMainEFvSt10unique_ptrINS3_28BeginMainFrameAndCommitStateESt14default_deleteIS6_EEEJNS_7WeakPtrIS4_EENS0_13PassedWrapperIS9_EEEEEFvvEE7RunImplISB_St5tupleIJSD_SF_EEJLm0ELm1EEEEvOT_OT0_NS_13IndexSequenceIJXspT1_EEEE
#10 0x7fe84f1cf44e _ZN4base8internal7InvokerINS0_9BindStateIMN2cc9ProxyMainEFvSt10unique_ptrINS3_28BeginMainFrameAndCommitStateESt14default_deleteIS6_EEEJNS_7WeakPtrIS4_EENS0_13PassedWrapperIS9_EEEEEFvvEE7RunOnceEPNS0_13BindStateBaseE
#11 0x7fe8536b9fee _ZNO4base8CallbackIFvvELNS_8internal8CopyModeE0ELNS2_10RepeatModeE0EE3RunEv
#12 0x7fe85370445e base::debug::TaskAnnotator::RunTask()
#13 0x7fe849473f8e blink::scheduler::TaskQueueManager::ProcessTaskFromWorkQueue()
#14 0x7fe849470f16 blink::scheduler::TaskQueueManager::DoWork()
#15 0x7fe84947c544 _ZN4base8internal13FunctorTraitsIMN5blink9scheduler16TaskQueueManagerEFvbEvE6InvokeIRKNS_7WeakPtrIS4_EEJRKbEEEvS6_OT_DpOT0_
#16 0x7fe84947c44f _ZN4base8internal12InvokeHelperILb1EvE8MakeItSoIRKMN5blink9scheduler16TaskQueueManagerEFvbERKNS_7WeakPtrIS6_EEJRKbEEEvOT_OT0_DpOT1_
#17 0x7fe84947c3c3 _ZN4base8internal7InvokerINS0_9BindStateIMN5blink9scheduler16TaskQueueManagerEFvbEJNS_7WeakPtrIS5_EEbEEEFvvEE7RunImplIRKS7_RKSt5tupleIJS9_bEEJLm0ELm1EEEEvOT_OT0_NS_13IndexSequenceIJXspT1_EEEE
#18 0x7fe84947c2dc _ZN4base8internal7InvokerINS0_9BindStateIMN5blink9scheduler16TaskQueueManagerEFvbEJNS_7WeakPtrIS5_EEbEEEFvvEE3RunEPNS0_13BindStateBaseE
#19 0x7fe8536b9fee _ZNO4base8CallbackIFvvELNS_8internal8CopyModeE0ELNS2_10RepeatModeE0EE3RunEv
#20 0x7fe85370445e base::debug::TaskAnnotator::RunTask()
#21 0x7fe853796e4d base::MessageLoop::RunTask()
#22 0x7fe8537970d7 base::MessageLoop::DeferOrRunPendingTask()
#23 0x7fe85379732d base::MessageLoop::DoWork()
#24 0x7fe8537a9448 base::MessagePumpDefault::Run()
#25 0x7fe853796888 base::MessageLoop::Run()
#26 0x7fe85383f38d base::RunLoop::Run()
#27 0x7fe856976364 content::RendererMain()
#28 0x7fe856dd0e1d content::RunZygote()
#29 0x7fe856dd11d0 content::RunNamedProcessTypeMain()
#30 0x7fe856dd34ad content::ContentMainRunnerImpl::Run()
#31 0x7fe856dcfc1a content::ContentServiceManagerMainDelegate::RunEmbedderProcess()
#32 0x7fe843e98dd1 service_manager::Main()
#33 0x7fe856dd0bcf content::ContentMain()
#34 0x0000004afff1 main
#35 0x7fe844becf45 __libc_start_main
#36 0x0000004afec4 <unknown>