Whoops. This doesn't need RVG (I grabbed a better screenshot :p)

Password bubble is also shown at similar spot just under where the app menu button would have been if it were not hidden.
(Using https://codereview.chromium.org/2808823002)

Deleted: Screen Shot 2017-04-12 at 6.52.46 PM.png 45.8 KB

	Screen Shot 2017-04-12 at 6.52.46 PM.png 45.8 KB View Download

This issue has been Available for over a year. If it's no longer important or seems unlikely to be fixed, please consider closing it out. If it is important, please re-triage the issue.

Sorry for the inconvenience if the bug really should have been left as Available.

For more details visit https://www.chromium.org/issue-tracking/autotriage - Your friendly Sheriffbot

We'll need to follow up on this for desktop PWAs on Mac.

Is this problem while using Cocoa or Views?

Since chrome://flags/#secondary-ui-md is enabled in the original report, I'd say this is a MacViews issue.

Currently permission prompts anchor to the location bar or the app menu depending on which one is present, in this case neither are.
Perhaps there should be a third default in the top center overlapping the title bar.

Secondary dialogs bug. Over to elly.

How does one make a bookmark app? I fiddled around a bunch and I can't figur eit out.

tapted@: what do here?

If you've enabled all the flags in #1, there should be an option in the three dot menu under "More tools" to add the site to Applications.

Otherwise:

1. Enable chrome://flags/#enable-desktop-pwas
2. Go to https://permission.site/
3. Open three dot menu > Create Shortcut...
4. Go to chrome://apps/
5. Right click newly installed shortcut and click "Open in Window"
6. Open app

#12: Thanks, those steps work - the flags in the original post do not cause a new menu item to appear but I can repro this issue using the steps you gave. I'll put up a fix.

It appears that alancutter@ fixed this in f591313ca81261589199eb545ca74eee09ef4d12 the day after this issue was filed :)